Well when i bought my 2002 honda civic, it was also bone stock.
THE first thing that i wanted to get rid of on my car were the headlights...so i took those out and replaced them with double halo projector headlights
Than i decided to take the stock rims off/tires and get 17" chrome casino rims, which i than replaced with Black BBS rims...
Its up to you basically...i wanted my car to not look like everyone elses so i just made my car look the way i wanted it to look...also did the taillights,grill, intake, spoiler, tint, blue interior dome lights, ect.
I had my stereo system jacked so i put stock back in, havent had any problems with that